body {
	padding-top: 70px;
	padding-bottom: 30px;
	font-family: 'Lato', 'Helvetica', sans-serif;
	background-color: #eeeeee; /*gray*/
}

.navbar {
	font-size: 2vh;
}
.panel-group {
	margin-bottom: 1vmin;
}
.navbar-brand { 
	font-size: 3vh;
	color: #000000;
}
.slider {
	margin: 1vmin;
}
.snug {
	width: 100%;
}
#show_all_refs {
	display: inline;
}
#user_message {
	font-size: 1.8vmin;
}

#left_panel {
	float:left;
}

#info_panel, #start_panel, #advanced_settings_panel {
	margin-left: 3vmin;
	margin-right: 3vmin;
}
#info_panel .panel-body, #start_panel .panel-body, #advanced_settings_panel .panel-body {
	padding-left: 2vmin;
	padding-right: 2vmin;
}

hr {
	margin: 0.5vmin 0vmin 0.5vmin 0vmin;
}

.panel-body {
	padding: 1vmin 1vmin 1vmin 1vmin;
}

.small_input {
	width: 35%;
	display: inline;
}

.tab-pane {
	padding: 1vmin 1vmin 0vmin 1vmin;
}

/*#region_box {
	padding: 2vmin 2vmin 2vmin 2vmin;
}*/

.tiny_input {
	width: 15%;
}

#svg1_panel, #svg2_panel {
	padding: 2vmin 2vmin 2vmin 2vmin;
	display: block;
	visibility: hidden;
}

#right_panel {
	font-size: 1vw;
	/*padding: 2vmin 2vmin 2vmin 2vmin;*/
	display: inline-block;
	visibility: hidden;
}

#select_reads { /* just a label */
	visibility: hidden;
}

svg {
	background-color: #ffffff; /*white*/
	font-family: 'Lato', 'Helvetica';
}


#sam_input, #coords_input, #bed_input, #vcf_input {
	padding: 1vmin 1vmin 1vmin 1vmin; 
	overflow-y: scroll; 
	resize: none; 
	white-space: nowrap; 
}

#sam_info_icon, #coords_info_icon, #bam_info_icon, .bed_info_icon, .vcf_info_icon{
	color: #aaaaaa;
}
input[type="file"] {
	padding: 0vmin 1vmin 1vmin 1vmin;
}

#region_selector_panel, #variant_input_panel, #feature_input_panel, #variant_table_panel, #bedpe_table_panel, #feature_table_panel {
	display: none;
}

#variant_table_box, #feature_table_box, #bedpe_table_box {
	height: 30%;
	overflow: scroll;
}

.d3-superTable-table th, .d3-superTable-table td {
	text-align: center;
	padding: 0.3vmin 0.3vmin 0.3vmin 0.3vmin;
	border: 1px solid #cccccc;
}

.ref_block, #svg2_panel .alignment_groups, #click_info_link, #click_getting_started_link, #click_advanced_settings_link {
	cursor: pointer;
}

th {
	font-weight: 900;
}

text {
	font-size: 1vw;
	font-family: 'Lato', 'Helvetica', sans-serif;
}

.tip {
	font-size: 2vmin;
	font-weight: 900;
	font-family: 'Lato', 'Helvetica', sans-serif;
}
#info_panel, #advanced_settings_panel {
	display: none;
}
#settings {
	display: none;
}

.settings_table {
	width: 100%;
	table-layout: fixed;
}
.settings_table table, .settings_table th, .settings_table td {
	/* top right bottom left */
	padding: 0.2vmin  0.2vmin 0.2vmin 0.2vmin;
	border: 0; /*.2px solid blue;*/
}

div.input-group {
	background-color: #bbbbbb;
	
}

.table_title {
	text-align: center;
	font-weight: 900;
	/*font-size: 2vmin;*/
}

#ribbon_vs_dotplot_container, #ribbon_vs_dotplot_container label {
	text-align: center;
	padding: 1vh 1vw 1vh 1vw ;
}

.d3-livesearch-input {
	width: 100%;
}

#text_read_output, #text_region_output, #text_alignment_file_output, #text_variant_file_output, #bam_fetch_info {
	font-size: 1vw;
	padding: 1vmin 1vmin 1vmin 1vmin ;
	white-space: nowrap;
	overflow-x: auto;
	overflow-y: auto;
	border: 1px solid #cccccc;
}

textarea #notes {
	padding: 1vmin 1vmin 1vmin 1vmin; 
	overflow: scroll;
	/*word-wrap: break-word;*/
}


rect.variants {
	stroke: none;
	fill-opacity: 0.5;
}
rect.variants.highlight {
	stroke: #000000;
	stroke-width: 1px;
	fill-opacity: 1;
}

path.bedpe_variants {
	fill: none;
	stroke-width: 2px;
	stroke-opacity: 0.6;
	stroke-linecap: round;
}
path.bedpe_variants.highlight {
	stroke-opacity: 1;
	stroke-width: 2px;
}
path.features {
	fill: none;
	stroke-width: 3px;
}

#no_alignments_message {
	font-size: 2vw;
}
path, line {
	/* Makes tiny alignments appear bigger by rounding ends*/
	stroke-linecap: round;
}

#selected_read_in_region_view .alignment{
	stroke-width: 6px;
}

.alignment {
	stroke-width: 3;
	stroke-opacity: 0.5;
}


ul#examples_list {
	cursor: pointer;
}


g.features text { 
	font-weight: 900;
}

path.ref_mapping {
	stroke: #000000;
	stroke-width: 0.5px;
	
}

#feature_filter_tab {
	display: none;
}